January 2018 CeNDR Updates
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January 2018 CeNDR Updates
Version 1.2.0 brings many updates to the site.
New Pages
- A statistics page has been added that details strains/isotypes collected over time, visitors over time, and
Site Infrastructure
- Added login system
- Moved codebase to Python 3.
- Improved robustness of forms using python module WTForms.
- Switched database to a single SQLite flatfile + Google Datastore
- Moved BAMs to AWS.
Mapping Pipeline
- Moved mapping infrastructure to AWS Fargate
- Added new description field
- The embargo option has been dropped for publishing reports
- Added tooltips to report allele distribution maps.
- Mapping reports have been removed from gene pages. The new database infrastructure makes it difficult to incorporate these.
Browser
- Add allele frequency (AF) as column on variant output.
- Added BAMs for strains
- Reorganized variant data table output. Variants that affect multiple transcripts are now grouped together.
Public Mappings
- The waffle chart has been removed.
Data
- CRAMS files and downloads have been removed.